| Software Package |
Description |
Version |
Main Command |
Location |
Restricted License? |
| Abaqus |
Finite Element Analysis |
6.8.4 |
abaqus |
ENG |
|
| 6.14 |
abaqus-6.14 |
ENG |
|
| Altair Hyperworks |
Topography |
2.20 |
hwx |
ENG |
|
| Anaconda Python |
Python Distribution |
2.7 |
python-anaconda |
ENG |
|
| 3.4 |
python34-anaconda |
ENG |
|
| BLAST+ |
Biological Sequence Analysis |
2.2.29 |
|
ENG |
|
| ANSYS 13 HFSS |
EM Simulation |
13 |
|
ENG |
|
| Arduino |
Integrated Development Environment |
1.8.3 |
|
ENG |
|
| ARM DS-5 |
Intel Development Studio |
DS-5_v5.29.3 |
|
ENG |
|
| Cadence |
Electronic Design Automation |
Multiple |
|
ENG |
|
| CompuCell3D |
Multiscale Biological Simulations |
3.7.3 |
compucell3d |
ENG |
|
| COMSOL |
Finite Element Analysis |
5.2 |
comsol |
ENG |
|
| 5.1 |
comsol51 |
ENG |
|
| 5.0 |
comsol50 |
ENG |
|
| 4.4 |
comsol44 |
ENG |
|
| 4.3 |
comsol43 |
ENG |
|
| CPLEX |
Linear Optimization |
12.6.0 |
cplex |
ENG |
|
| 12.5.1 |
cplex1251 |
ENG |
|
| FFmpeg |
Multimedia Framework |
N-79126 |
ffmpeg |
ENG |
|
| Foldit |
Protein Folding as a Puzzle Game |
|
foldit |
ENG |
|
| genometools |
Genome Analysis |
1.5.7 |
gt |
ENG |
|
| gmsh |
Finite Element Mesh Generator |
2.14.0 |
gmsh |
ENG |
|
| GNU Binutils |
Programming tools |
2.26 |
|
ENG |
|
| GNU GCC |
Compiler Suite (C, C++ packages) |
5.2.1 |
|
ENG |
|
| Gnuplot |
Graphing tool |
5.0.2 |
gnuplot |
ENG |
|
| Graphviz |
Graph Visualization |
2.26 |
dot |
Local |
|
| GROMACS |
Molecular Dynamics Simulator |
5.0.2 |
gmx |
ENG |
|
| Gurobi |
Optimization Solver |
6.5.1 |
|
ENG |
|
| Intel Composer XE |
C++ Compiler Suite |
2011_sp1.8.273 |
icc |
ENG |
Educational Use Only |
| ImageJ |
Image Processing |
1.49 |
ImageJ |
ENG |
|
| LAMMPS |
Molecular Dynamics Simulator |
2012-11-14 |
lammps |
ENG |
|
| libctl |
control files for simulations |
3.2.2 |
gen-ctl-io |
ENG |
|
| Lumerical FDTD |
FDTD-method Maxwell solver |
8.11.387 |
lumerical-fdtd-8.11 |
ENG |
By user |
| 8.15.758 |
lumerical-fdtd |
ENG |
| Lumerical MODE |
Waveguide Design Environment |
7.5.387 |
lumerical-mode |
ENG |
| Lumerical DEVICE |
Semiconductor Multiphysics |
5.0.847 |
lumerical-device |
ENG |
| Mathematica |
Computer Algebra System |
9.0.1 |
mathematica901 |
AFS |
|
| 10.0.1 |
mathematica |
ENG |
|
| MATLAB |
Numerical Computing |
2013a (8.1) |
matlab81 |
AFS |
|
| 2014a (8.3) |
matlab83 |
ENG |
|
| 2015a (8.5) |
matlab85 |
ENG |
|
| 2015b (8.6) |
matlab86 |
ENG |
|
| 2016a (9.0) |
matlab90 |
ENG |
|
| 2016b (9.1) |
matlab91 |
ENG |
|
| 2017a (9.2) |
matlab92 |
ENG |
|
| 2017b (9.3) |
matlab93 |
ENG |
|
| 2018a (9.4) |
matlab94 |
ENG |
|
| Meep |
FDTD electromagnetic simulator |
1.3 |
meep |
ENG |
|
| Minicom |
Terminal Emulator |
2.3 |
minicom |
Local |
|
| Morpheus |
Multiscale/Multicellular Simulations |
1.9.1 |
|
ENG |
|
| MPB |
Electromagnetic simulator |
1.5 |
mpb |
ENG |
|
| OpenCV |
Computer Vision Library |
3.1.0 |
|
ENG |
|
| PyMOL |
Molecular Visualization System |
1.6 |
pymol |
Local |
|
| Quantum ESPRESSO |
Ab Initio Quantum Simulator |
4.3.1 |
|
ENG |
|
| R |
Statistical Computing |
3.0.1 |
R |
Local |
|
| Python |
Python Development Environment |
2.7.5 |
python |
ENG |
|
| RStudio |
R Development Environment |
0.98.994 |
rstudio |
ENG |
|
| SPIM & XSPIM |
MIPS Simulator |
7.3 |
|
ENG |
|
| Siemens/Mentor Modelsim |
HDL Simulator |
10.7c |
|
ENG |
|
| Synopsys |
EDA Tools |
|
|
ENG |
|
| Xilinx/Vivado |
HDL & ML |
2021.2 |
|
ENG |
|